IL_4DR7_070
3D structure
- PDB id
- 4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- G(4OC)C(5MC)*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DR7_070 not in the Motif Atlas
- Geometric match to IL_8CRE_467
- Geometric discrepancy: 0.2364
- The information below is about IL_8CRE_467
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4DR7|1|A|G|1401
4DR7|1|A|4OC|1402
4DR7|1|A|C|1403
4DR7|1|A|5MC|1404
*
4DR7|1|A|G|1497
4DR7|1|A|UR3|1498
4DR7|1|A|A|1499
4DR7|1|A|A|1500
4DR7|1|A|C|1501
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain V
- 5'-R(*UP*UP*UP*U)-3'
- Chain b
- 5'-R(P*UP*UP*U)-3'
Coloring options: