IL_4DR7_071
3D structure
- PDB id
- 4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- (5MC)GU(5MC)AC*GAAGUCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4DR7|1|A|5MC|1404
4DR7|1|A|G|1405
4DR7|1|A|U|1406
4DR7|1|A|5MC|1407
4DR7|1|A|A|1408
4DR7|1|A|C|1409
*
4DR7|1|A|G|1491
4DR7|1|A|A|1492||A
4DR7|1|A|A|1493||A
4DR7|1|A|G|1494
4DR7|1|A|U|1495
4DR7|1|A|C|1496
4DR7|1|A|G|1497
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain V
- 5'-R(*UP*UP*UP*U)-3'
- Chain W
- 5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'
- Chain b
- 5'-R(P*UP*UP*U)-3'
Coloring options: