IL_4DR7_075

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

4DR7|1|A|G|1026, 4DR7|1|A|C|1027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR7|1|A|G|1003
4DR7|1|A|G|1003|||A
4DR7|1|A|A|1004
4DR7|1|A|A|1005
4DR7|1|A|C|1006
*
4DR7|1|A|G|1023
4DR7|1|A|G|1024
4DR7|1|A|U|1025
4DR7|1|A|G|1026
4DR7|1|A|C|1027
4DR7|1|A|C|1028
4DR7|1|A|C|1029
4DR7|1|A|C|1030
4DR7|1|A|G|1030|||A
4DR7|1|A|C|1030|||B
4DR7|1|A|G|1030|||C
4DR7|1|A|A|1030|||D
4DR7|1|A|G|1031
4DR7|1|A|G|1032
4DR7|1|A|G|1033
4DR7|1|A|G|1034
4DR7|1|A|A|1035
4DR7|1|A|G|1036
4DR7|1|A|C|1037
4DR7|1|A|C|1038

Current chains

Chain A

16S rRNA

Nearby chains