IL_4DS6_001

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCAUG*CUUACC

Length

11 nucleotides

Bulged bases

4DS6|1|A|U|13, 4DS6|1|A|A|260, 4DS6|1|A|C|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DS6_001 not in the Motif Atlas

Geometric match to IL_3IGI_001

Geometric discrepancy: 0.1267

The information below is about IL_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99498.1

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4DS6|1|A|G|10
4DS6|1|A|C|11
4DS6|1|A|A|12
4DS6|1|A|U|13
4DS6|1|A|G|14
*
4DS6|1|A|C|257
4DS6|1|A|U|258
4DS6|1|A|U|259
4DS6|1|A|A|260
4DS6|1|A|C|261
4DS6|1|A|C|262

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains