IL_4DS6_003

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

4DS6|1|A|A|106, 4DS6|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DS6_003 not in the Motif Atlas

Homologous match to IL_5J02_003

Geometric discrepancy: 0.1414

The information below is about IL_5J02_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DS6|1|A|C|76
4DS6|1|A|A|77
4DS6|1|A|A|78
4DS6|1|A|G|79
*
4DS6|1|A|U|103
4DS6|1|A|G|104
4DS6|1|A|A|105
4DS6|1|A|A|106
4DS6|1|A|G|107
4DS6|1|A|G|108
4DS6|1|A|A|109
4DS6|1|A|A|110
4DS6|1|A|G|111

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains