IL_4DS6_008

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4DS6|1|A|A|206, 4DS6|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DS6_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.2071

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DS6|1|A|U|168
4DS6|1|A|G|169
*
4DS6|1|A|C|197
4DS6|1|A|U|198
4DS6|1|A|U|199
4DS6|1|A|U|200
4DS6|1|A|C|201
4DS6|1|A|U|202
4DS6|1|A|G|203
4DS6|1|A|C|204
4DS6|1|A|C|205
4DS6|1|A|A|206
4DS6|1|A|A|207
4DS6|1|A|A|208
4DS6|1|A|G|209

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains