3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
CUACC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DUY_009 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.0503
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

4DUY|1|A|C|132
4DUY|1|A|U|133
4DUY|1|A|A|134
4DUY|1|A|C|135
4DUY|1|A|C|136
*
4DUY|1|A|G|227
4DUY|1|A|A|228
4DUY|1|A|U|229
4DUY|1|A|G|230

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
ribosomal protein S16
Chain T
ribosomal protein S20

Coloring options:


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