IL_4DUY_034

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0344

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4DUY|1|A|C|779
4DUY|1|A|A|780
4DUY|1|A|A|781
4DUY|1|A|A|782
4DUY|1|A|C|783
*
4DUY|1|A|G|799
4DUY|1|A|G|800
4DUY|1|A|U|801
4DUY|1|A|A|802
4DUY|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11