IL_4DUY_057

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_057 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.292

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4DUY|1|A|G|1416
4DUY|1|A|G|1417
4DUY|1|A|A|1418
4DUY|1|A|G|1419
4DUY|1|A|C|1420
*
4DUY|1|A|G|1480
4DUY|1|A|U|1481
4DUY|1|A|G|1482
4DUY|1|A|A|1483
4DUY|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12