3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
GGAAU*GGAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DUY_062 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.0476
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

4DUY|1|A|G|673
4DUY|1|A|G|674
4DUY|1|A|A|675
4DUY|1|A|A|676
4DUY|1|A|U|677
*
4DUY|1|A|G|713
4DUY|1|A|G|714
4DUY|1|A|A|715
4DUY|1|A|A|716
4DUY|1|A|C|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
ribosomal protein S6
Chain K
ribosomal protein S11
Chain R
ribosomal protein S18

Coloring options:


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