IL_4DUY_064

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUY_064 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0607

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DUY|1|A|G|1401
4DUY|1|A|4OC|1402
4DUY|1|A|C|1403
4DUY|1|A|5MC|1404
*
4DUY|1|A|G|1497
4DUY|1|A|UR3|1498
4DUY|1|A|A|1499
4DUY|1|A|A|1500
4DUY|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains