IL_4DUZ_059

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

G(4OC)C(5MC)GU(5MC)AC*GAAGUCG(UR3)AAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DUZ|1|A|G|1401
4DUZ|1|A|4OC|1402
4DUZ|1|A|C|1403
4DUZ|1|A|5MC|1404
4DUZ|1|A|G|1405
4DUZ|1|A|U|1406
4DUZ|1|A|5MC|1407
4DUZ|1|A|A|1408
4DUZ|1|A|C|1409
*
4DUZ|1|A|G|1491
4DUZ|1|A|A|1492
4DUZ|1|A|A|1493
4DUZ|1|A|G|1494
4DUZ|1|A|U|1495
4DUZ|1|A|C|1496
4DUZ|1|A|G|1497
4DUZ|1|A|UR3|1498
4DUZ|1|A|A|1499
4DUZ|1|A|A|1500
4DUZ|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12