IL_4DUZ_066

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

4DUZ|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUZ_066 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2371

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4DUZ|1|A|C|43
4DUZ|1|A|G|44
4DUZ|1|A|U|45
*
4DUZ|1|A|G|396
4DUZ|1|A|A|397
4DUZ|1|A|C|398
4DUZ|1|A|G|399

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16