IL_4DUZ_072

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

4DUZ|1|A|U|1257, 4DUZ|1|A|U|1278, 4DUZ|1|A|A|1279, 4DUZ|1|A|A|1280, 4DUZ|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DUZ|1|A|G|1255
4DUZ|1|A|A|1256
4DUZ|1|A|U|1257
4DUZ|1|A|G|1258
4DUZ|1|A|C|1259
*
4DUZ|1|A|G|1276
4DUZ|1|A|C|1277
4DUZ|1|A|U|1278
4DUZ|1|A|A|1279
4DUZ|1|A|A|1280
4DUZ|1|A|U|1281
4DUZ|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14