IL_4DUZ_076

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

(5MC)GU(5MC)*GUCG

Length

8 nucleotides

Bulged bases

4DUZ|1|A|C|1496

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DUZ_076 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3029

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4DUZ|1|A|5MC|1404
4DUZ|1|A|G|1405
4DUZ|1|A|U|1406
4DUZ|1|A|5MC|1407
*
4DUZ|1|A|G|1494
4DUZ|1|A|U|1495
4DUZ|1|A|C|1496
4DUZ|1|A|G|1497

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12