IL_4DV0_019

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_019 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1405

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4DV0|1|A|G|446
4DV0|1|A|G|447
4DV0|1|A|A|448
4DV0|1|A|C|449
4DV0|1|A|G|450
*
4DV0|1|A|C|483
4DV0|1|A|G|484
4DV0|1|A|G|485
4DV0|1|A|U|486
4DV0|1|A|A|487
4DV0|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16