IL_4DV0_034

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV0_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0725

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4DV0|1|A|C|779
4DV0|1|A|A|780
4DV0|1|A|A|781
4DV0|1|A|A|782
4DV0|1|A|C|783
*
4DV0|1|A|G|799
4DV0|1|A|G|800
4DV0|1|A|U|801
4DV0|1|A|A|802
4DV0|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11