3D structure

PDB id
4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV1_020 not in the Motif Atlas
Homologous match to IL_4LFB_018
Geometric discrepancy: 0.1429
The information below is about IL_4LFB_018
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4DV1|1|A|G|446
4DV1|1|A|G|447
4DV1|1|A|A|448
4DV1|1|A|C|449
4DV1|1|A|G|450
*
4DV1|1|A|C|483
4DV1|1|A|G|484
4DV1|1|A|G|485
4DV1|1|A|U|486
4DV1|1|A|A|487
4DV1|1|A|C|488

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4
Chain P
ribosomal protein S16

Coloring options:


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