IL_4DV1_024

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4DV1|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_024 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

4DV1|1|A|C|569
4DV1|1|A|G|570
4DV1|1|A|U|571
4DV1|1|A|A|572
4DV1|1|A|A|573
4DV1|1|A|A|574
4DV1|1|A|G|575
*
4DV1|1|A|C|880
4DV1|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

ribosomal protein S5

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17