IL_4DV1_043

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

AGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCU

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV1|1|A|A|1001
4DV1|1|A|G|1002
4DV1|1|A|G|1003
4DV1|1|A|G|1003|||A
4DV1|1|A|A|1004
4DV1|1|A|A|1005
4DV1|1|A|C|1006
4DV1|1|A|C|1007
4DV1|1|A|C|1008
4DV1|1|A|G|1009
*
4DV1|1|A|U|1020
4DV1|1|A|G|1021
4DV1|1|A|G|1022
4DV1|1|A|G|1023
4DV1|1|A|G|1024
4DV1|1|A|U|1025
4DV1|1|A|G|1026
4DV1|1|A|C|1027
4DV1|1|A|C|1028
4DV1|1|A|C|1029
4DV1|1|A|C|1030
4DV1|1|A|G|1030|||A
4DV1|1|A|C|1030|||B
4DV1|1|A|G|1030|||C
4DV1|1|A|A|1030|||D
4DV1|1|A|G|1031
4DV1|1|A|G|1032
4DV1|1|A|G|1033
4DV1|1|A|G|1034
4DV1|1|A|A|1035
4DV1|1|A|G|1036
4DV1|1|A|C|1037
4DV1|1|A|C|1038
4DV1|1|A|C|1039
4DV1|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14