3D structure

PDB id
4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
GGG*CCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV1_059 not in the Motif Atlas
Geometric match to IL_1SI3_001
Geometric discrepancy: 0.1385
The information below is about IL_1SI3_001
Detailed Annotation
Isolated non-canonical cWW contact
Broad Annotation
No text annotation
Motif group
IL_44465.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
9

Unit IDs

4DV1|1|A|G|1309
4DV1|1|A|G|1310
4DV1|1|A|G|1311
*
4DV1|1|A|C|1326
4DV1|1|A|C|1327
4DV1|1|A|C|1328

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
ribosomal protein S13
Chain S
ribosomal protein S19
Chain U
ribosomal protein THX

Coloring options:


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