IL_4DV1_060

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

G(4OC)C(5MC)GU(5MC)AC*GAAGUCG(UR3)AAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV1|1|A|G|1401
4DV1|1|A|4OC|1402
4DV1|1|A|C|1403
4DV1|1|A|5MC|1404
4DV1|1|A|G|1405
4DV1|1|A|U|1406
4DV1|1|A|5MC|1407
4DV1|1|A|A|1408
4DV1|1|A|C|1409
*
4DV1|1|A|G|1491
4DV1|1|A|A|1492
4DV1|1|A|A|1493
4DV1|1|A|G|1494
4DV1|1|A|U|1495
4DV1|1|A|C|1496
4DV1|1|A|G|1497
4DV1|1|A|UR3|1498
4DV1|1|A|A|1499
4DV1|1|A|A|1500
4DV1|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12