3D structure

PDB id
4DV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
CGAAG*CGAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV1_063 not in the Motif Atlas
Homologous match to IL_4LFB_062
Geometric discrepancy: 0.1055
The information below is about IL_4LFB_062
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_77691.5
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

4DV1|1|A|C|1431
4DV1|1|A|G|1432
4DV1|1|A|A|1433
4DV1|1|A|A|1434
4DV1|1|A|G|1435
*
4DV1|1|A|C|1466
4DV1|1|A|G|1467
4DV1|1|A|A|1468
4DV1|1|A|G|1469

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
ribosomal protein S20

Coloring options:


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