IL_4DV1_070

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

UGCAUG*CAUG

Length

10 nucleotides

Bulged bases

4DV1|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV1_070 not in the Motif Atlas

Homologous match to IL_6CZR_365

Geometric discrepancy: 0.2509

The information below is about IL_6CZR_365

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45699.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4DV1|1|A|U|1052
4DV1|1|A|G|1053
4DV1|1|A|C|1054
4DV1|1|A|A|1055
4DV1|1|A|U|1056
4DV1|1|A|G|1057
*
4DV1|1|A|C|1203
4DV1|1|A|A|1204
4DV1|1|A|U|1205
4DV1|1|A|G|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14