IL_4DV2_012

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

ACCC*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_012 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2229

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4DV2|1|A|A|185
4DV2|1|A|C|186
4DV2|1|A|C|187
4DV2|1|A|C|188
*
4DV2|1|A|G|190|||K
4DV2|1|A|U|190|||L
4DV2|1|A|G|191
4DV2|1|A|U|192

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20