IL_4DV2_070

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

4DV2|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_070 not in the Motif Atlas

Geometric match to IL_8C3A_008

Geometric discrepancy: 0.275

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4DV2|1|A|C|43
4DV2|1|A|G|44
4DV2|1|A|U|45
*
4DV2|1|A|G|396
4DV2|1|A|A|397
4DV2|1|A|C|398
4DV2|1|A|G|399

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16