IL_4DV2_079

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCAGCGG*CCGG

Length

11 nucleotides

Bulged bases

4DV2|1|A|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV2_079 not in the Motif Atlas

Homologous match to IL_6CZR_159

Geometric discrepancy: 0.3136

The information below is about IL_6CZR_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV2|1|A|C|1128
4DV2|1|A|C|1129
4DV2|1|A|A|1130
4DV2|1|A|G|1131
4DV2|1|A|C|1132
4DV2|1|A|G|1133
4DV2|1|A|G|1134
*
4DV2|1|A|C|1140
4DV2|1|A|C|1141
4DV2|1|A|G|1142
4DV2|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9