IL_4DV2_080

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GCGAUGC*GCUAAUCGC

Length

16 nucleotides

Bulged bases

4DV2|1|A|U|1257, 4DV2|1|A|A|1279, 4DV2|1|A|A|1280, 4DV2|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV2|1|A|G|1253
4DV2|1|A|C|1254
4DV2|1|A|G|1255
4DV2|1|A|A|1256
4DV2|1|A|U|1257
4DV2|1|A|G|1258
4DV2|1|A|C|1259
*
4DV2|1|A|G|1276
4DV2|1|A|C|1277
4DV2|1|A|U|1278
4DV2|1|A|A|1279
4DV2|1|A|A|1280
4DV2|1|A|U|1281
4DV2|1|A|C|1282
4DV2|1|A|G|1283
4DV2|1|A|C|1284

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14

Chain U

ribosomal protein THX