3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GU(5MC)*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV2_083 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.2132
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4DV2|1|A|G|1405
4DV2|1|A|U|1406
4DV2|1|A|5MC|1407
*
4DV2|1|A|G|1494
4DV2|1|A|U|1495
4DV2|1|A|C|1496

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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