IL_4DV2_088

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UUAGUUGC*GGCACUCUAA

Length

18 nucleotides

Bulged bases

4DV2|1|A|U|1122, 4DV2|1|A|U|1125, 4DV2|1|A|G|1127, 4DV2|1|A|C|1145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV2|1|A|U|1121
4DV2|1|A|U|1122
4DV2|1|A|A|1123
4DV2|1|A|G|1124
4DV2|1|A|U|1125
4DV2|1|A|U|1126
4DV2|1|A|G|1127
4DV2|1|A|C|1128
*
4DV2|1|A|G|1143
4DV2|1|A|G|1144
4DV2|1|A|C|1145
4DV2|1|A|A|1146
4DV2|1|A|C|1147
4DV2|1|A|U|1148
4DV2|1|A|C|1149
4DV2|1|A|U|1150
4DV2|1|A|A|1151
4DV2|1|A|A|1152

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10