3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
4DV3|1|A|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_018 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1718
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4DV3|1|A|G|409
4DV3|1|A|G|410
4DV3|1|A|A|411
4DV3|1|A|A|412
4DV3|1|A|G|413
4DV3|1|A|A|414
4DV3|1|A|A|415
4DV3|1|A|G|416
*
4DV3|1|A|U|427
4DV3|1|A|G|428
4DV3|1|A|U|429
4DV3|1|A|A|430
4DV3|1|A|A|431
4DV3|1|A|A|432
4DV3|1|A|C|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4

Coloring options:


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