3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GCU*G(2MG)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_042 not in the Motif Atlas
Homologous match to IL_4LFB_043
Geometric discrepancy: 0.1128
The information below is about IL_4LFB_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4DV3|1|A|G|1050
4DV3|1|A|C|1051
4DV3|1|A|U|1052
*
4DV3|1|A|G|1206
4DV3|1|A|2MG|1207
4DV3|1|A|C|1208

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
ribosomal protein S3
Chain N
ribosomal protein S14

Coloring options:


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