IL_4DV3_042

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV3_042 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV3|1|A|G|1050
4DV3|1|A|C|1051
4DV3|1|A|U|1052
*
4DV3|1|A|G|1206
4DV3|1|A|2MG|1207
4DV3|1|A|C|1208

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain N

ribosomal protein S14