IL_4DV3_063
3D structure
- PDB id
- 4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- (5MC)GU(5MC)*GUCG
- Length
- 8 nucleotides
- Bulged bases
- 4DV3|1|A|C|1496
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV3_063 not in the Motif Atlas
- Geometric match to IL_5C5W_003
- Geometric discrepancy: 0.2816
- The information below is about IL_5C5W_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 52
Unit IDs
4DV3|1|A|5MC|1404
4DV3|1|A|G|1405
4DV3|1|A|U|1406
4DV3|1|A|5MC|1407
*
4DV3|1|A|G|1494
4DV3|1|A|U|1495
4DV3|1|A|C|1496
4DV3|1|A|G|1497
Current chains
- Chain A
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: