IL_4DV3_063

3D structure

PDB id

4DV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

(5MC)GU(5MC)*GUCG

Length

8 nucleotides

Bulged bases

4DV3|1|A|C|1496

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV3_063 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2816

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

4DV3|1|A|5MC|1404
4DV3|1|A|G|1405
4DV3|1|A|U|1406
4DV3|1|A|5MC|1407
*
4DV3|1|A|G|1494
4DV3|1|A|U|1495
4DV3|1|A|C|1496
4DV3|1|A|G|1497

Current chains

Chain A

16S rRNA

Nearby chains