3D structure

PDB id
4DV3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
(5MC)GU(5MC)*GUCG
Length
8 nucleotides
Bulged bases
4DV3|1|A|C|1496
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DV3_063 not in the Motif Atlas
Geometric match to IL_5C5W_003
Geometric discrepancy: 0.2816
The information below is about IL_5C5W_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_54697.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
52

Unit IDs

4DV3|1|A|5MC|1404
4DV3|1|A|G|1405
4DV3|1|A|U|1406
4DV3|1|A|5MC|1407
*
4DV3|1|A|G|1494
4DV3|1|A|U|1495
4DV3|1|A|C|1496
4DV3|1|A|G|1497

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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