IL_4DV4_049

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV4_049 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.1215

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4DV4|1|A|C|1158
4DV4|1|A|U|1159
4DV4|1|A|G|1160
4DV4|1|A|C|1161
*
4DV4|1|A|G|1175
4DV4|1|A|A|1176
4DV4|1|A|G|1177
4DV4|1|A|G|1178
4DV4|1|A|A|1179
4DV4|1|A|A|1180
4DV4|1|A|G|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain I

ribosomal protein S9