IL_4DV4_050

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV4_050 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.1562

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4DV4|1|A|C|1244
4DV4|1|A|A|1245
4DV4|1|A|C|1246
*
4DV4|1|A|G|1291
4DV4|1|A|U|1292
4DV4|1|A|G|1293

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9

Chain M

ribosomal protein S13

Chain U

ribosomal protein THX