IL_4DV5_044

3D structure

PDB id

4DV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV5_044 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.2598

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4DV5|1|A|G|1009
4DV5|1|A|G|1010
4DV5|1|A|G|1011
*
4DV5|1|A|C|1018
4DV5|1|A|C|1019
4DV5|1|A|U|1020

Current chains

Chain A

16S rRNA

Nearby chains