IL_4DV5_056
3D structure
- PDB id
- 4DV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.68 Å
Loop
- Sequence
- CACU*GGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4DV5_056 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2157
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4DV5|1|A|C|1244
4DV5|1|A|A|1245
4DV5|1|A|C|1246
4DV5|1|A|U|1247
*
4DV5|1|A|G|1290
4DV5|1|A|G|1291
4DV5|1|A|U|1292
4DV5|1|A|G|1293
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- ribosomal protein S7
- Chain I
- ribosomal protein S9
- Chain M
- ribosomal protein S13
- Chain U
- ribosomal protein THX
Coloring options: