IL_4DV5_062

3D structure

PDB id

4DV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

G(4OC)C(5MC)GU(5MC)AC*GAAGUCG(UR3)AAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV5|1|A|G|1401
4DV5|1|A|4OC|1402
4DV5|1|A|C|1403
4DV5|1|A|5MC|1404
4DV5|1|A|G|1405
4DV5|1|A|U|1406
4DV5|1|A|5MC|1407
4DV5|1|A|A|1408
4DV5|1|A|C|1409
*
4DV5|1|A|G|1491
4DV5|1|A|A|1492
4DV5|1|A|A|1493
4DV5|1|A|G|1494
4DV5|1|A|U|1495
4DV5|1|A|C|1496
4DV5|1|A|G|1497
4DV5|1|A|UR3|1498
4DV5|1|A|A|1499
4DV5|1|A|A|1500
4DV5|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12