IL_4DV7_040

3D structure

PDB id

4DV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DV7_040 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1993

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4DV7|1|A|C|999
4DV7|1|A|U|1000
4DV7|1|A|A|1001
*
4DV7|1|A|U|1040
4DV7|1|A|A|1041
4DV7|1|A|G|1042

Current chains

Chain A

16S rRNA

Nearby chains