IL_4E58_004

3D structure

PDB id

4E58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of GCC(LCG)CCGC duplex containing LNA residue

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

(LCG)CC*(LCG)CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: LCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E58_004 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1037

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4E58|1|C|LCG|4
4E58|1|C|C|5
4E58|1|C|C|6
*
4E58|1|D|LCG|4
4E58|1|D|C|5
4E58|1|D|C|6

Current chains

Chain C

RNA duplex containing CCG repeats

Chain D

RNA duplex containing CCG repeats

Nearby chains

Chain E

RNA duplex containing CCG repeats