IL_4E58_005

3D structure

PDB id

4E58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of GCC(LCG)CCGC duplex containing LNA residue

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

(LCG)CC*(LCG)CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: LCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E58_005 not in the Motif Atlas

Geometric match to IL_7ECP_001

Geometric discrepancy: 0.1161

The information below is about IL_7ECP_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4E58|1|E|LCG|4
4E58|1|E|C|5
4E58|1|E|C|6
*
4E58|1|E|LCG|4||||7_555
4E58|1|E|C|5||||7_555
4E58|1|E|C|6||||7_555

Current chains

Chain E

RNA duplex containing CCG repeats

Nearby chains

Chain C

RNA duplex containing CCG repeats

Chain D

RNA duplex containing CCG repeats