IL_4E8K_009

3D structure

PDB id

4E8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAG*CAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8K_009 not in the Motif Atlas

Homologous match to IL_5J02_008

Geometric discrepancy: 0.1325

The information below is about IL_5J02_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8K|1|A|U|172
4E8K|1|A|G|173
4E8K|1|A|A|174
4E8K|1|A|G|175
*
4E8K|1|A|C|190
4E8K|1|A|A|191
4E8K|1|A|A|192
4E8K|1|A|A|193
4E8K|1|A|G|194

Current chains

Chain A

Group IIC intron

Nearby chains