IL_4E8K_010

3D structure

PDB id

4E8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8K_010 not in the Motif Atlas

Geometric match to IL_3IGI_010

Geometric discrepancy: 0.0841

The information below is about IL_3IGI_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96788.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4E8K|1|A|G|267
4E8K|1|A|A|268
4E8K|1|A|G|269
4E8K|1|A|G|270
4E8K|1|A|U|271
*
4E8K|1|A|A|282
4E8K|1|A|A|283
4E8K|1|A|G|284
4E8K|1|A|U|285
4E8K|1|A|C|286

Current chains

Chain A

Group IIC intron

Nearby chains