IL_4E8K_016

3D structure

PDB id

4E8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

AAUG*CUUUCUGCCAAAGUU

Length

19 nucleotides

Bulged bases

4E8K|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8K|1|A|A|166
4E8K|1|A|A|167
4E8K|1|A|U|168
4E8K|1|A|G|169
*
4E8K|1|A|C|197
4E8K|1|A|U|198
4E8K|1|A|U|199
4E8K|1|A|U|200
4E8K|1|A|C|201
4E8K|1|A|U|202
4E8K|1|A|G|203
4E8K|1|A|C|204
4E8K|1|A|C|205
4E8K|1|A|A|206
4E8K|1|A|A|207
4E8K|1|A|A|208
4E8K|1|A|G|209
4E8K|1|A|U|210
4E8K|1|A|U|211

Current chains

Chain A

Group IIC intron

Nearby chains