IL_4E8M_001

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAUG*CUUACC

Length

11 nucleotides

Bulged bases

4E8M|1|A|U|13, 4E8M|1|A|A|260, 4E8M|1|A|C|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8M_001 not in the Motif Atlas

Geometric match to IL_3IGI_001

Geometric discrepancy: 0.1275

The information below is about IL_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99498.1

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4E8M|1|A|G|10
4E8M|1|A|C|11
4E8M|1|A|A|12
4E8M|1|A|U|13
4E8M|1|A|G|14
*
4E8M|1|A|C|257
4E8M|1|A|U|258
4E8M|1|A|U|259
4E8M|1|A|A|260
4E8M|1|A|C|261
4E8M|1|A|C|262

Current chains

Chain A

Group IIC intron

Nearby chains