IL_4E8M_006

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

4E8M|1|A|U|152, 4E8M|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8M_006 not in the Motif Atlas

Homologous match to IL_5J02_005

Geometric discrepancy: 0.1867

The information below is about IL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8M|1|A|A|149
4E8M|1|A|U|150
4E8M|1|A|A|151
4E8M|1|A|U|152
4E8M|1|A|G|153
4E8M|1|A|A|154
4E8M|1|A|G|155
4E8M|1|A|G|156
*
4E8M|1|A|U|221
4E8M|1|A|A|222
4E8M|1|A|A|223
4E8M|1|A|A|224
4E8M|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains