IL_4E8M_007

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGGUA*UACAGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8M|1|A|C|157
4E8M|1|A|U|158
4E8M|1|A|A|159
4E8M|1|A|G|160
4E8M|1|A|G|161
4E8M|1|A|U|162
4E8M|1|A|A|163
*
4E8M|1|A|U|214
4E8M|1|A|A|215
4E8M|1|A|C|216
4E8M|1|A|A|217
4E8M|1|A|G|218
4E8M|1|A|A|219
4E8M|1|A|G|220

Current chains

Chain A

Group IIC intron

Nearby chains