IL_4E8M_009

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CUUUCUGCCAAG*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8M_009 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.208

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8M|1|A|U|168
4E8M|1|A|G|169
*
4E8M|1|A|C|197
4E8M|1|A|U|198
4E8M|1|A|U|199
4E8M|1|A|U|200
4E8M|1|A|C|201
4E8M|1|A|U|202
4E8M|1|A|G|203
4E8M|1|A|C|204
4E8M|1|A|C|205
4E8M|1|A|A|206
4E8M|1|A|A|208
4E8M|1|A|G|209
*
4E8M|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains