IL_4E8M_014

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAGG*CUGAAGGAAG

Length

15 nucleotides

Bulged bases

4E8M|1|A|A|105, 4E8M|1|A|A|106, 4E8M|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8M|1|A|C|76
4E8M|1|A|A|77
4E8M|1|A|A|78
4E8M|1|A|G|79
4E8M|1|A|G|80
*
4E8M|1|A|C|102
4E8M|1|A|U|103
4E8M|1|A|G|104
4E8M|1|A|A|105
4E8M|1|A|A|106
4E8M|1|A|G|107
4E8M|1|A|G|108
4E8M|1|A|A|109
4E8M|1|A|A|110
4E8M|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains