IL_4E8P_009

3D structure

PDB id

4E8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4E8P|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8P_009 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.2144

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8P|1|A|U|168
4E8P|1|A|G|169
*
4E8P|1|A|C|197
4E8P|1|A|U|198
4E8P|1|A|U|199
4E8P|1|A|U|200
4E8P|1|A|C|201
4E8P|1|A|U|202
4E8P|1|A|G|203
4E8P|1|A|C|204
4E8P|1|A|C|205
4E8P|1|A|A|206
4E8P|1|A|A|207
4E8P|1|A|A|208
4E8P|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains